PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479472
Common NameARALYDRAFT_479472
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 269aa    MW: 29348.3 Da    PI: 9.0317
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479472genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011105127123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ykC+ Cgk F++   L  H  +H
   479472 105 YKCSVCGKAFPSYQALGGHKASH 127
              9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.34E-9104127No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5104127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.801105132IPR007087Zinc finger, C2H2
SMARTSM003550.0043105127IPR015880Zinc finger, C2H2-like
PfamPF139129.8E-14105128IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576673.34E-9157184No hitNo description
PROSITE profilePS501579.099162184IPR007087Zinc finger, C2H2
SMARTSM003550.17162184IPR015880Zinc finger, C2H2-like
PfamPF139128.8E-14162186IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MALEAMKSPT SFTRIETKED LMNDAVFIEP WLKRKRSKRQ RSHSPSSSSS SPPRSRPKSQ  60
NQDLTEEEYL ALCLLMLAKD QPSQTRFHQQ SQSLTPPPES KNLPYKCSVC GKAFPSYQAL  120
GGHKASHRIK PPTVISTADD STAPTISVVG EKHPIAASGK IHECSICHKV FPTGQALGGH  180
KRCHYEGNLG GGGGSKSISH SGSVSSTVSE ERSHRGFIDL NLPALPELSL HNNPIVDEEI  240
LSPLTGKKPL LLTDHDQVIK KEDFSLRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138LKRKRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0307300.0AB030730.1 Arabidopsis thaliana AZF2 gene for Cys2/His2-type zinc finger protein 2, complete cds.
GenBankAF2503370.0AF250337.1 Arabidopsis thaliana zinc finger protein AZF2 (AZF2) mRNA, complete cds.
GenBankAP0004170.0AP000417.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMB12.
GenBankBT0038160.0BT003816.1 Arabidopsis thaliana clone C105170 putative zinc finger protein (At3g19580) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885316.10.0hypothetical protein ARALYDRAFT_479472
SwissprotQ9SSW21e-153AZF2_ARATH; Zinc finger protein AZF2
TrEMBLD7LA100.0D7LA10_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.3__2173__AT3G19580.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-146zinc-finger protein 2